Believe it or not I prefer the XBox controller. It was a little awkward at first, but after I got use to it all other controller just seem too small and flimsy. Its a solid hunk of plastic that fills up your hands.
Second place goes to Dreamcast. Absolutely perfect placement of the buttons and d-pad and stick. Plus it introduced the brilliant "trigger" button concept as a real trigger and not a shoulder button.
Third to PS/PS2. The classic.
Fourth to Gamecube. Its just too damn small.
Last to N64. Flimsy and cheaply made, clumsy, not very responsive.
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