You're supposed to play the original first. Master Quest is intended for the people have already played through OoT at least once and know the puzzles and stuff.
It doesn't matter if you play Master Quest first, its just slightly more challenging than OoT, possibly more so since you haven't played OoT first.
Plus, the differences in Master Quest won't mean anything unless you've played OoT already.
In conclusion, I siggest you play OoT first, but it won't be the end of the world if you skip to Master Quest.
*shrugs and walks away*
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